If you’ve been on the hunt for a treat that’s both delicious and diet-friendly, I have just the thing for you: this Gluten-Free Vegan Coconut Cupcakes Recipe. These cupcakes offer the perfect balance of moist, tender crumb and delightful coconut flavor without any gluten or animal products. Whether you’re vegan, gluten-sensitive, or just craving something sweet and tropical, these cupcakes are an absolute game changer. They’re fluffy, naturally sweetened with coconut sugar, and bursting with the richness of coconut milk and shredded coconut — making each bite feel like a gentle island escape. You’re going to love how easy and rewarding this recipe is to make!

Ingredients You’ll Need
Getting your ingredients right is what makes this recipe shine. Each component plays a distinct role, from lending structure to adding that subtle sweetness and tropical flair. Don’t worry, all of these ingredients are simple pantry staples or easy-to-find items that combine effortlessly to bring these cupcakes to life.
- 1 ½ cups gluten-free all-purpose flour: Provides the perfect base with a light and tender crumb, great for gluten-sensitive diets.
- ¾ cup coconut sugar: Adds natural sweetness with a caramel-like depth without overpowering the coconut flavor.
- 1 cup full-fat coconut milk: Infuses moisture and rich, creamy coconut essence for a tender bite.
- 3 tbsp flaxseed meal + 9 tbsp water (flaxseed egg): A fantastic vegan binder that replaces eggs while adding a slight nuttiness.
- 2 tsp baking powder: The secret ingredient for cupcakes that rise beautifully with a soft texture.
- 1 tsp vanilla extract: Enhances all the other flavors with its warm and fragrant notes.
- ½ cup unsweetened shredded coconut: Adds texture and boosts the coconut punch that makes these cupcakes extra special.
How to Make Gluten-Free Vegan Coconut Cupcakes Recipe
Step 1: Preheat and Prepare Your Pan
Begin by heating your oven to 350°F (175°C). Line your cupcake tin with paper liners — this prevents sticking and makes cleanup a breeze while ensuring your cupcakes keep their shape perfectly.
Step 2: Make the Flaxseed Egg
Mix the 3 tablespoons of flaxseed meal with 9 tablespoons of water in a small bowl. Let it sit for about five minutes until it thickens into a gel-like consistency. This mixture mimics the binding properties of eggs without any animal products.
Step 3: Combine Dry Ingredients
In a large mixing bowl, whisk together the gluten-free flour, coconut sugar, baking powder, and shredded coconut. This blend creates the flavorful and textured base for your cupcakes, ensuring even distribution of all components.
Step 4: Add Wet Ingredients
Pour in the full-fat coconut milk, vanilla extract, and the flaxseed egg into the dry ingredient mixture. Gently stir until just combined. Be careful not to overmix as this can make cupcakes tough instead of tender and fluffy.
Step 5: Fill Cupcake Liners
Spoon the batter into the cupcake liners, filling each about two-thirds full. This allows space for the cupcakes to rise while baking without spilling over.
Step 6: Bake Until Golden
Place the tin in the oven and bake for 18-20 minutes. Check doneness by inserting a toothpick into the center of a cupcake — it should come out clean or with just a few moist crumbs.
Step 7: Cool Before Serving
Once baked to perfection, set your cupcakes aside to cool in the tin for a few minutes, then transfer them to a wire rack. Cooling completely before frosting or enjoying ensures the best texture and flavor.
How to Serve Gluten-Free Vegan Coconut Cupcakes Recipe

Garnishes
Sprinkling additional shredded coconut or a dusting of powdered sugar on top adds an elegant finishing touch. You can also top them with a simple vegan frosting, like whipped coconut cream or a glaze made from powdered sugar and coconut milk, to elevate their presentation and flavor.
Side Dishes
Serve these cupcakes with a refreshing tropical fruit salad or a cup of fragrant herbal tea to balance the sweet richness. Light, fresh accompaniments complement the dense coconut flavor and make for a delightful treat any time of day.
Creative Ways to Present
Try serving your Gluten-Free Vegan Coconut Cupcakes Recipe in pretty paper cups or stack them on a tiered dessert stand for gatherings. For a playful twist, use edible flowers or toasted coconut flakes as decorations—they instantly jazz up the look and add layers of flavor.
Make Ahead and Storage
Storing Leftovers
Store any leftover cupcakes in an airtight container at room temperature for up to two days, or refrigerate for up to five days. Keeping them sealed preserves moisture so they remain soft and delicious.
Freezing
If you want to make these ahead of time or save extras, they’re freezer-friendly! Wrap cupcakes tightly in plastic wrap and place them in a freezer-safe container. They’ll keep well for up to three months and thaw quickly when needed.
Reheating
To enjoy cupcakes warm, simply pop them in a microwave for 15-20 seconds or warm lightly in the oven at 300°F (150°C) for 5-7 minutes. This brings back their fresh-baked softness and enhances the coconut aroma beautifully.
FAQs
Can I substitute the coconut sugar with another sweetener?
Absolutely! You can use coconut sugar for its unique flavor, but brown sugar or organic cane sugar are fine substitutes. Just keep in mind that coconut sugar adds a slightly caramel-like depth that complements the coconut beautifully.
Is there an alternative to flaxseed egg?
Yes. Chia seeds mixed with water work similarly as a vegan binder. Use the same ratio of 3 tablespoons chia seeds to 9 tablespoons water and let it gel before adding it to your batter.
How can I make these cupcakes nut-free?
The recipe as is contains no tree nuts, but be sure the gluten-free flour blend you use is nut-free if allergies are a concern. Also, double-check shredded coconut brands to ensure no cross-contamination occurs.
Can I add frosting to these cupcakes?
Certainly! Vegan frostings like coconut whipped cream, maple glaze, or dairy-free buttercream make fantastic additions. Just be sure cupcakes are fully cooled before frosting to avoid melting.
How moist are these cupcakes compared to traditional ones?
Thanks to the full-fat coconut milk and flaxseed egg, these cupcakes have a wonderfully moist, tender texture. They might be slightly denser than traditional cupcakes but remain fluffy and soft in every bite.
Final Thoughts
There’s something truly special about baking cupcakes that everyone can enjoy without compromise, and this Gluten-Free Vegan Coconut Cupcakes Recipe is proof of that. It’s easy, flavorful, and feels just as indulgent as any classic cupcake. So go ahead, treat yourself and your loved ones — these cupcakes bring a little sunshine and sweetness wherever they go. I can’t wait for you to try them and make this recipe a beloved staple in your kitchen!
Print
Gluten-Free Vegan Coconut Cupcakes Recipe
- Prep Time: 15 minutes
- Cook Time: 20 minutes
- Total Time: 35 minutes
- Yield: 12 cupcakes
- Category: Dessert
- Method: Baking
- Cuisine: Vegan
- Diet: Gluten Free
Description
Delight in these moist and fluffy Gluten-Free Vegan Coconut Cupcakes, perfect for anyone seeking a dairy-free, egg-free, and gluten-free treat. Made with wholesome ingredients like coconut milk, flaxseed eggs, and gluten-free flour, these cupcakes boast a naturally sweet coconut flavor enhanced by shredded coconut and coconut sugar. Ideal for special occasions or everyday indulgence, they bake up beautifully golden and tender with a subtle tropical twist.
Ingredients
Dry Ingredients
- 1 ½ cups gluten-free all-purpose flour
- ¾ cup coconut sugar
- 2 tsp baking powder
- ½ cup unsweetened shredded coconut
Wet Ingredients
- 1 cup full-fat coconut milk
- 3 tbsp flaxseed meal + 9 tbsp water (flaxseed egg)
- 1 tsp vanilla extract
Instructions
- Preheat Oven: Preheat your oven to 350°F (175°C) and line a cupcake tin with paper liners to prepare for baking.
- Prepare Flaxseed Egg: In a small bowl, combine 3 tablespoons of flaxseed meal with 9 tablespoons of water. Stir well and let it sit for about five minutes until it thickens to an egg-like consistency.
- Mix Dry Ingredients: In a large mixing bowl, whisk together the gluten-free flour, coconut sugar, baking powder, and unsweetened shredded coconut to evenly distribute all ingredients.
- Combine Wet and Dry: Add the coconut milk, vanilla extract, and prepared flaxseed egg to the dry ingredient bowl. Stir gently until just combined, being careful not to overmix to maintain cupcake tenderness.
- Fill Cupcake Liners: Spoon the batter into the prepared cupcake liners, filling each about two-thirds full to allow room for rising.
- Bake: Place the cupcake tin in the preheated oven and bake for 18 to 20 minutes, or until the tops turn golden brown and a toothpick inserted into the center comes out clean.
- Cool and Serve: Remove the cupcakes from the oven and allow them to cool in the pan for a few minutes before transferring to a wire rack to cool completely. Frost or serve as desired.
Notes
- Ensure the gluten-free flour blend is suitable for baking to get the best texture.
- Flaxseed egg is a vegan substitute for eggs – do not skip this as it helps bind the batter.
- For a richer coconut flavor, use full-fat coconut milk rather than light versions.
- Do not overmix the batter to avoid dense cupcakes.
- These cupcakes can be stored in an airtight container at room temperature for up to 2 days or refrigerated for up to 5 days.
- Feel free to frost with your favorite vegan frosting or enjoy plain.

